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D1.1 DNA replication

태그
DNA
replication
semiconservative
helicase
polymerase
leading strand
lagging strand
Okazaki fragment
PCR
Gel electrophoresis
denaturation
annealing
elongation
Date

Understanding points

D1.1.1 DNA replication as production of exact copies of DNA with identical base sequences D1.1.2 Semi-conservative nature of DNA replication and role of complementary base pairing D1.1.3 Role of helicase and DNA polymerase in DNA replication D1.1.4 Polymerase chain reaction and gel electrophoresis as tools for amplifying and separating DNA D1.1.5 Applications of polymerase chain reaction and gel electrophoresis D1.1.6 Directionality of DNA polymerases (HL only) D1.1.7 Differences between replication on the leading strand and the lagging strand (HL only) D1.1.8 Functions of DNA primase, DNA polymerase I, DNA polymerase III and DNA ligase in replication (HL only) D1.1.9 DNA proofreading (HL only)

DNA replication

Occurs during S phase in interphase
Produces identical diploid daughter cells in mitosis
Semiconservative: each DNA molecule produced has one new strand and one parental strand
Helicase breaks H bonding to unwind DNA double helix ↓ *(AHL) DNA primase synthesizes RNA primer on parental DNA strand ↓ DNA polymerase III adds deoxynucleotides complementary to the 3’ end of template strands ↓ A-T and G-C complementary base pairing *(AHL) New strand synthesis occurs in 5’ → 3´ direction *(AHL) Synthesis is continuous on leading strand but discontinuous on lagging strand ↓ DNA polymerase I removes the RNA primers and replaces them with DNA ↓ *(AHL) DNA ligase joins Okazaki fragments in the lagging strand

DNA replication enzymes

Helicase 
Unwinds the DNA double helix and separates the strands by breaking the hydrogen bonds between bases 
*(AHL) DNA primase
Adds nucleoside triphosphates on the lagging strand to form a RNA primer
DNA polymerase III
Adds deoxynucleotide triphosphates to the 3’ end *(AHL) Also carries out DNA proofreading
DNA polymerase I
Removes the RNA primer and replaces it with a DNA segment
*(AHL) DNA ligase 
Joins the Okazaki fragments together 

Tools for amplifying and separating DNA

 Used for DNA profiling, Paternity testing, COVID testing
Polymerase chain reaction (PCR)
Need: DNA sample, Taq DNA polymerase, primers, nucleotides
Denaturation: heat DNA to separate strands
Annealing: cool to attach primers
Extension: DNA polymerase adds dNTP to synthesize new strand
Repeat to amplify DNA sample
Gel electrophoresis
Separates DNA according to size
DNA is negatively charged due to phosphate group → migrates to positive electrode
Smaller fragments travel faster and thus farther in the gel